IL_1VY6_186

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

1VY6|1|CA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY6_186 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1305

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

1VY6|1|CA|G|409
1VY6|1|CA|G|410
1VY6|1|CA|A|411
1VY6|1|CA|A|412
1VY6|1|CA|G|413
1VY6|1|CA|A|414
1VY6|1|CA|A|415
1VY6|1|CA|G|416
*
1VY6|1|CA|U|427
1VY6|1|CA|G|428
1VY6|1|CA|U|429
1VY6|1|CA|A|430
1VY6|1|CA|A|431
1VY6|1|CA|A|432
1VY6|1|CA|C|433

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S4