IL_1VY6_218

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAUGC*GCUAAUC

Length

12 nucleotides

Bulged bases

1VY6|1|CA|U|1257, 1VY6|1|CA|U|1278, 1VY6|1|CA|A|1280, 1VY6|1|CA|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY6|1|CA|G|1255
1VY6|1|CA|A|1256
1VY6|1|CA|U|1257
1VY6|1|CA|G|1258
1VY6|1|CA|C|1259
*
1VY6|1|CA|G|1276
1VY6|1|CA|C|1277
1VY6|1|CA|U|1278
1VY6|1|CA|A|1279
1VY6|1|CA|A|1280
1VY6|1|CA|U|1281
1VY6|1|CA|C|1282

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CJ

30S ribosomal protein S10

Chain CN

30S ribosomal protein S14 type Z