IL_1VY6_235
3D structure
- PDB id
- 1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VY6_235 not in the Motif Atlas
- Geometric match to IL_7RQB_006
- Geometric discrepancy: 0.0488
- The information below is about IL_7RQB_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
1VY6|1|DA|G|188
1VY6|1|DA|G|189
1VY6|1|DA|A|190
1VY6|1|DA|A|191
1VY6|1|DA|C|192
1VY6|1|DA|U|193
1VY6|1|DA|G|194
*
1VY6|1|DA|C|201
1VY6|1|DA|U|202
1VY6|1|DA|C|203
1VY6|1|DA|A|204
1VY6|1|DA|G|205
1VY6|1|DA|U|206
1VY6|1|DA|A|207
1VY6|1|DA|C|208
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain D1
- 50S ribosomal protein L28
- Chain D7
- 50S ribosomal protein L34
- Chain D8
- 50S ribosomal protein L35
- Chain DP
- 50S ribosomal protein L15
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