IL_1VY6_299

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGGAGG*CCGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY6_299 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.3782

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1VY6|1|DA|G|1856
1VY6|1|DA|G|1857
1VY6|1|DA|G|1858
1VY6|1|DA|A|1859
1VY6|1|DA|G|1860
1VY6|1|DA|G|1861
*
1VY6|1|DA|C|1881
1VY6|1|DA|C|1882
1VY6|1|DA|G|1883
1VY6|1|DA|A|1884
1VY6|1|DA|A|1885
1VY6|1|DA|C|1886

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L28