IL_1VY6_310

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAGC*GCGCCGGUGAAAUAC

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY6|1|DA|G|2124
1VY6|1|DA|G|2125
1VY6|1|DA|A|2126
1VY6|1|DA|G|2127
1VY6|1|DA|C|2128
*
1VY6|1|DA|G|2160
1VY6|1|DA|C|2161
1VY6|1|DA|G|2162
1VY6|1|DA|C|2163
1VY6|1|DA|C|2164
1VY6|1|DA|G|2165
1VY6|1|DA|G|2166
1VY6|1|DA|U|2167
1VY6|1|DA|G|2168
1VY6|1|DA|A|2169
1VY6|1|DA|A|2170
1VY6|1|DA|A|2171
1VY6|1|DA|U|2172
1VY6|1|DA|A|2173
1VY6|1|DA|C|2174

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains