IL_1VY6_339

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGGGACAACC*GGCUAAUCCCC

Length

21 nucleotides

Bulged bases

1VY6|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY6|1|AA|G|145
1VY6|1|AA|G|146
1VY6|1|AA|G|147
1VY6|1|AA|G|148
1VY6|1|AA|A|149
1VY6|1|AA|C|150
1VY6|1|AA|A|151
1VY6|1|AA|A|152
1VY6|1|AA|C|153
1VY6|1|AA|C|154
*
1VY6|1|AA|G|167
1VY6|1|AA|G|168
1VY6|1|AA|C|169
1VY6|1|AA|U|170
1VY6|1|AA|A|171
1VY6|1|AA|A|172
1VY6|1|AA|U|173
1VY6|1|AA|C|174
1VY6|1|AA|C|175
1VY6|1|AA|C|176
1VY6|1|AA|C|177

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20