IL_1VY6_340

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GACCCG*UGUGUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VY6_340 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3137

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

1VY6|1|AA|G|184
1VY6|1|AA|A|185
1VY6|1|AA|C|186
1VY6|1|AA|C|187
1VY6|1|AA|C|188
1VY6|1|AA|G|189
*
1VY6|1|AA|U|189|||K
1VY6|1|AA|G|189|||L
1VY6|1|AA|U|190
1VY6|1|AA|G|191
1VY6|1|AA|U|192
1VY6|1|AA|C|193

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20