IL_1VY6_354

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGCUAGGGG*CUACCAAACC

Length

19 nucleotides

Bulged bases

1VY6|1|DA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY6|1|DA|G|874
1VY6|1|DA|G|875
1VY6|1|DA|C|876
1VY6|1|DA|U|877
1VY6|1|DA|A|878
1VY6|1|DA|G|879
1VY6|1|DA|G|880
1VY6|1|DA|G|881
1VY6|1|DA|G|882
*
1VY6|1|DA|C|894
1VY6|1|DA|U|895
1VY6|1|DA|A|896
1VY6|1|DA|C|897
1VY6|1|DA|C|898
1VY6|1|DA|A|899
1VY6|1|DA|A|900
1VY6|1|DA|A|901
1VY6|1|DA|C|902
1VY6|1|DA|C|903

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DQ

50S ribosomal protein L16

Chain DZ

50S ribosomal protein L25