IL_1W2B_002

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

1W2B|1|0|A|449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1W2B_002 not in the Motif Atlas

Homologous match to IL_4V9F_002

Geometric discrepancy: 0.0947

The information below is about IL_4V9F_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

1W2B|1|0|G|33
1W2B|1|0|C|34
*
1W2B|1|0|G|448
1W2B|1|0|A|449
1W2B|1|0|C|450

Current chains

Chain 0

23S RRNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L4P

Chain S

RIBOSOMAL PROTEIN L24

Chain Z

RIBOSOMAL PROTEIN L37E