IL_1W2B_037

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUUG*CUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1W2B_037 not in the Motif Atlas

Homologous match to IL_4V9F_036

Geometric discrepancy: 0.0917

The information below is about IL_4V9F_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02203.1

Basepair signature

cWW-cSW-cWW-cWW

Number of instances in this motif group

1

Unit IDs

1W2B|1|0|A|965
1W2B|1|0|U|966
1W2B|1|0|U|967
1W2B|1|0|G|968
*
1W2B|1|0|C|1000
1W2B|1|0|U|1001
1W2B|1|0|G|1002
1W2B|1|0|U|1003

Current chains

Chain 0

23S RRNA

Nearby chains

Chain H

50S RIBOSOMAL PROTEIN L10E