IL_1W2B_082

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUC*GGCUU

Length

8 nucleotides

Bulged bases

1W2B|1|0|C|2526

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1W2B_082 not in the Motif Atlas

Homologous match to IL_4V9F_084

Geometric discrepancy: 0.0982

The information below is about IL_4V9F_084

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

1W2B|1|0|G|2494
1W2B|1|0|U|2495
1W2B|1|0|C|2496
*
1W2B|1|0|G|2524
1W2B|1|0|G|2525
1W2B|1|0|C|2526
1W2B|1|0|U|2527
1W2B|1|0|U|2528

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain H

50S RIBOSOMAL PROTEIN L10E