IL_1W2B_095

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

1W2B|1|0|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1W2B_095 not in the Motif Atlas

Homologous match to IL_4V9F_096

Geometric discrepancy: 0.0542

The information below is about IL_4V9F_096

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1W2B|1|0|G|2772
1W2B|1|0|G|2773
1W2B|1|0|U|2774
1W2B|1|0|A|2775
1W2B|1|0|A|2776
1W2B|1|0|G|2777
*
1W2B|1|0|C|2797
1W2B|1|0|G|2798
1W2B|1|0|A|2799
1W2B|1|0|A|2800
1W2B|1|0|A|2801
1W2B|1|0|C|2802

Current chains

Chain 0

23S RRNA

Nearby chains

Chain E

50S RIBOSOMAL PROTEIN L6P

Chain I

50S RIBOSOMAL PROTEIN L13P