IL_1W2B_104
3D structure
- PDB id
- 1W2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Trigger Factor ribosome binding domain in complex with 50S
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GGAGUAC*GGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1W2B_104 not in the Motif Atlas
- Homologous match to IL_4V9F_106
- Geometric discrepancy: 0.0744
- The information below is about IL_4V9F_106
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
1W2B|1|9|G|75
1W2B|1|9|G|76
1W2B|1|9|A|77
1W2B|1|9|G|78
1W2B|1|9|U|79
1W2B|1|9|A|80
1W2B|1|9|C|81
*
1W2B|1|9|G|101
1W2B|1|9|G|102
1W2B|1|9|A|103
1W2B|1|9|A|104
1W2B|1|9|A|105
1W2B|1|9|C|106
Current chains
- Chain 9
- 5S RRNA
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain H
- 50S RIBOSOMAL PROTEIN L10E
- Chain V
- 50S RIBOSOMAL PROTEIN L30P
Coloring options: