IL_1X9K_002
3D structure
- PDB id
- 1X9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- An all-RNA Hairpin Ribozyme with mutation U39C
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.17 Å
Loop
- Sequence
- GAGAAACAC*GGUACAUUACC
- Length
- 20 nucleotides
- Bulged bases
- 1X9K|1|D|C|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1X9K_002 not in the Motif Atlas
- Geometric match to IL_2P7E_001
- Geometric discrepancy: 0.1022
- The information below is about IL_2P7E_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60797.2
- Basepair signature
- cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
1X9K|1|C|G|19
1X9K|1|C|A|20
1X9K|1|C|G|21
1X9K|1|C|A|22
1X9K|1|C|A|23
1X9K|1|C|A|24
1X9K|1|C|C|25
1X9K|1|C|A|26
1X9K|1|C|C|27
*
1X9K|1|D|G|35
1X9K|1|D|G|36
1X9K|1|D|U|37
1X9K|1|D|A|38
1X9K|1|D|C|39
1X9K|1|D|A|40
1X9K|1|D|U|41
1X9K|1|D|U|42
1X9K|1|D|A|43
1X9K|1|D|C|44
1X9K|1|D|C|45
Current chains
- Chain C
- 5'-R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3'
- Chain D
- 5'-R(*UP*CP*GP*UP*GP*GP*UP*AP*CP*AP*UP*UP*AP*CP*CP*UP*GP*CP*C)-3'
Nearby chains
- Chain A
- 5'-R(*UP*CP*GP*CP*AP*GP*UP*CP*CP*UP*AP*UP*U)-3'
- Chain B
- 5'-R(*AP*AP*UP*AP*GP*AP*GP*AP*AP*GP*CP*GP*A)-3'
Coloring options: