IL_1XHP_009

3D structure

PDB id

1XHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution Structure of the Extended U6 ISL as Observed in the U2/U6 complex from Saccharomyces cerevisiae

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CAG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XHP_009 not in the Motif Atlas

Geometric match to IL_4V88_405

Geometric discrepancy: 0.1161

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

1XHP|5|A|C|4
1XHP|5|A|A|5
1XHP|5|A|G|6
*
1XHP|5|A|C|27
1XHP|5|A|C|28
1XHP|5|A|G|29

Current chains

Chain A

U6 snRNA

Nearby chains