IL_1XMO_038

3D structure

PDB id

1XMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of mnm5U34t6A37-tRNALysUUU Complexed with AAG-mRNA in the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UGC*GCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGC,GCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XMO_038 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.2078

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

1XMO|1|A|U|997
1XMO|1|A|G|998
1XMO|1|A|C|999
*
1XMO|1|A|G|1042
1XMO|1|A|C|1043
1XMO|1|A|A|1044

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14