IL_1XMO_053

3D structure

PDB id

1XMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of mnm5U34t6A37-tRNALysUUU Complexed with AAG-mRNA in the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XMO_053 not in the Motif Atlas

Geometric match to IL_5Z1I_004

Geometric discrepancy: 0.2

The information below is about IL_5Z1I_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

1XMO|1|A|G|1405
1XMO|1|A|U|1406
1XMO|1|A|C|1407
*
1XMO|1|A|G|1494
1XMO|1|A|U|1495
1XMO|1|A|C|1496

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain W

A-Site Messenger RNA

Chain X

Anticodon Transfer RNA