IL_1XMQ_027

3D structure

PDB id

1XMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XMQ_027 not in the Motif Atlas

Homologous match to IL_4LFB_027

Geometric discrepancy: 0.0709

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

1XMQ|1|A|G|654
1XMQ|1|A|A|655
*
1XMQ|1|A|U|751
1XMQ|1|A|G|752
1XMQ|1|A|A|753
1XMQ|1|A|C|754

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain H

30S Ribosomal Protein S8

Chain O

30S Ribosomal Protein S15