IL_1XMQ_033

3D structure

PDB id

1XMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XMQ_033 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0355

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

1XMQ|1|A|C|779
1XMQ|1|A|A|780
1XMQ|1|A|A|781
1XMQ|1|A|A|782
1XMQ|1|A|C|783
*
1XMQ|1|A|G|799
1XMQ|1|A|G|800
1XMQ|1|A|U|801
1XMQ|1|A|A|802
1XMQ|1|A|G|803

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain K

30S Ribosomal Protein S11