IL_1XMQ_054

3D structure

PDB id

1XMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XMQ_054 not in the Motif Atlas

Homologous match to IL_4LFB_060

Geometric discrepancy: 0.1808

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

1XMQ|1|A|G|1416
1XMQ|1|A|G|1417
1XMQ|1|A|A|1418
1XMQ|1|A|G|1419
*
1XMQ|1|A|U|1481
1XMQ|1|A|G|1482
1XMQ|1|A|A|1483
1XMQ|1|A|C|1484

Current chains

Chain A

16s ribosomal RNA

Nearby chains