IL_1XNQ_017

3D structure

PDB id

1XNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XNQ_017 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.0973

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

1XNQ|1|A|G|446
1XNQ|1|A|G|447
1XNQ|1|A|A|448
1XNQ|1|A|C|449
1XNQ|1|A|G|450
*
1XNQ|1|A|C|483
1XNQ|1|A|G|484
1XNQ|1|A|G|485
1XNQ|1|A|U|486
1XNQ|1|A|A|487
1XNQ|1|A|C|488

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

Ribosomal protein S4

Chain P

Ribosomal protein S16