IL_1XNQ_058

3D structure

PDB id

1XNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Inosine-Adenine Wobble Base Pair Complex in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XNQ_058 not in the Motif Atlas

Homologous match to IL_4LFB_062

Geometric discrepancy: 0.0628

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

1XNQ|1|A|C|1431
1XNQ|1|A|G|1432
1XNQ|1|A|A|1433
1XNQ|1|A|A|1434
1XNQ|1|A|G|1435
*
1XNQ|1|A|C|1466
1XNQ|1|A|G|1467
1XNQ|1|A|A|1468
1XNQ|1|A|G|1469

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

Ribosomal protein S20