IL_1XNR_014

3D structure

PDB id

1XNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of an Inosine-Cytosine Wobble Base Pair in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GG*UGGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XNR_014 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.0597

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

1XNR|1|A|G|292
1XNR|1|A|G|293
*
1XNR|1|A|U|304
1XNR|1|A|G|305
1XNR|1|A|G|306
1XNR|1|A|C|307
1XNR|1|A|C|308

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain L

16S Ribosomal protein S12

Chain P

16S Ribosomal protein S16