IL_1XNR_039

3D structure

PDB id

1XNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of an Inosine-Cytosine Wobble Base Pair in the Context of the Decoding Center

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

1XNR|1|A|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XNR_039 not in the Motif Atlas

Homologous match to IL_4LFB_042

Geometric discrepancy: 0.1351

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

1XNR|1|A|G|1048
1XNR|1|A|U|1049
1XNR|1|A|G|1050
*
1XNR|1|A|C|1208
1XNR|1|A|C|1209

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain N

16S Ribosomal protein S14