IL_1XWU_001

3D structure

PDB id

1XWU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of ACAUAGA loop

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AAC*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1XWU_001 not in the Motif Atlas

Geometric match to IL_3DIL_006

Geometric discrepancy: 0.2835

The information below is about IL_3DIL_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

1XWU|1|A|A|4
1XWU|1|A|A|5
1XWU|1|A|C|6
*
1XWU|1|A|G|10
1XWU|1|A|A|11
1XWU|1|A|U|12

Current chains

Chain A

5'-R(*CP*GP*AP*AP*AP*CP*AP*UP*AP*GP*AP*UP*UP*CP*GP*A)-3'

Nearby chains