IL_1Y69_035

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CUCAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

1Y69|1|0|C|1152

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_035 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.3476

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

1Y69|1|0|C|1029
1Y69|1|0|U|1030
1Y69|1|0|C|1031
1Y69|1|0|A|1032
1Y69|1|0|G|1033
1Y69|1|0|U|1034
1Y69|1|0|G|1035
*
1Y69|1|0|C|1150
1Y69|1|0|U|1151
1Y69|1|0|C|1152
1Y69|1|0|A|1153
1Y69|1|0|A|1154
1Y69|1|0|G|1155

Current chains

Chain 0

23S ribosomal RNA

Nearby chains