IL_1Y69_036
3D structure
- PDB id
- 1Y69 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.33 Å
Loop
- Sequence
- GGUUAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 1Y69|1|0|U|1037, 1Y69|1|0|U|1141
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1Y69_036 not in the Motif Atlas
- Geometric match to IL_7A0S_037
- Geometric discrepancy: 0.1991
- The information below is about IL_7A0S_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
1Y69|1|0|G|1035
1Y69|1|0|G|1036
1Y69|1|0|U|1037
1Y69|1|0|U|1038
1Y69|1|0|A|1039
1Y69|1|0|A|1040
1Y69|1|0|G|1041
*
1Y69|1|0|C|1135
1Y69|1|0|G|1136
1Y69|1|0|A|1137
1Y69|1|0|A|1138
1Y69|1|0|A|1139
1Y69|1|0|A|1140
1Y69|1|0|U|1141
1Y69|1|0|G|1142
1Y69|1|0|A|1143
1Y69|1|0|U|1144
1Y69|1|0|C|1145
1Y69|1|0|G|1146
1Y69|1|0|G|1147
1Y69|1|0|G|1148
1Y69|1|0|G|1149
1Y69|1|0|C|1150
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain 9
- 5S ribosomal RNA; 5S rRNA
- Chain K
- 50S ribosomal protein L16
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