IL_1Y69_049

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_049 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.1231

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

1Y69|1|0|A|1275
1Y69|1|0|U|1276
1Y69|1|0|G|1277
1Y69|1|0|A|1278
1Y69|1|0|G|1279
1Y69|1|0|U|1280
1Y69|1|0|A|1281
1Y69|1|0|A|1282
*
1Y69|1|0|U|1994
1Y69|1|0|G|1995
1Y69|1|0|A|1996
1Y69|1|0|A|1997
1Y69|1|0|A|1998
1Y69|1|0|U|1999
1Y69|1|0|U|2000

Current chains

Chain 0

23S ribosomal RNA

Nearby chains