IL_1Y69_067

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

ACUUUG*CUGU

Length

10 nucleotides

Bulged bases

1Y69|1|0|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_067 not in the Motif Atlas

Geometric match to IL_7A0S_062

Geometric discrepancy: 0.2116

The information below is about IL_7A0S_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

1Y69|1|0|A|1686
1Y69|1|0|C|1687
1Y69|1|0|U|1688
1Y69|1|0|U|1689
1Y69|1|0|U|1690
1Y69|1|0|G|1691
*
1Y69|1|0|C|1973
1Y69|1|0|U|1974
1Y69|1|0|G|1975
1Y69|1|0|U|1976

Current chains

Chain 0

23S ribosomal RNA

Nearby chains