IL_1Y69_068

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

1Y69|1|0|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_068 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1467

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1Y69|1|0|C|1703
1Y69|1|0|G|1704
1Y69|1|0|U|1705
1Y69|1|0|A|1706
1Y69|1|0|A|1707
1Y69|1|0|C|1708
*
1Y69|1|0|G|1713
1Y69|1|0|A|1714
1Y69|1|0|A|1715
1Y69|1|0|G|1716
1Y69|1|0|A|1717
1Y69|1|0|A|1718
1Y69|1|0|G|1719

Current chains

Chain 0

23S ribosomal RNA

Nearby chains