IL_1Y69_070

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

UGCCAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

1Y69|1|0|C|1792, 1Y69|1|0|C|1808, 1Y69|1|0|U|1812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_070 not in the Motif Atlas

Homologous match to IL_4WF9_069

Geometric discrepancy: 0.3347

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

1Y69|1|0|U|1789
1Y69|1|0|G|1790
1Y69|1|0|C|1791
1Y69|1|0|C|1792
1Y69|1|0|A|1793
1Y69|1|0|A|1794
1Y69|1|0|C|1795
*
1Y69|1|0|G|1805
1Y69|1|0|G|1806
1Y69|1|0|A|1807
1Y69|1|0|C|1808
1Y69|1|0|G|1809
1Y69|1|0|U|1810
1Y69|1|0|A|1811
1Y69|1|0|U|1812
1Y69|1|0|A|1813

Current chains

Chain 0

23S ribosomal RNA

Nearby chains