IL_1Y69_075

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

UCAAG*UGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_075 not in the Motif Atlas

Homologous match to IL_7A0S_069

Geometric discrepancy: 0.2203

The information below is about IL_7A0S_069

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1Y69|1|0|U|1843
1Y69|1|0|C|1844
1Y69|1|0|A|1845
1Y69|1|0|A|1846
1Y69|1|0|G|1847
*
1Y69|1|0|U|1870
1Y69|1|0|G|1871
1Y69|1|0|A|1872
1Y69|1|0|A|1873
1Y69|1|0|G|1874

Current chains

Chain 0

23S ribosomal RNA

Nearby chains