IL_1Y69_080

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

1Y69|1|0|U|1946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_080 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.4775

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

1Y69|1|0|C|1917
1Y69|1|0|G|1918
1Y69|1|0|A|1919
1Y69|1|0|A|1920
1Y69|1|0|A|1921
1Y69|1|0|U|1922
1Y69|1|0|U|1923
1Y69|1|0|C|1924
1Y69|1|0|C|1925
1Y69|1|0|U|1926
1Y69|1|0|U|1927
1Y69|1|0|G|1928
*
1Y69|1|0|C|1944
1Y69|1|0|C|1945
1Y69|1|0|U|1946
1Y69|1|0|G|1947

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 8

Ribosome-recycling factor