IL_1Y69_116

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

UGCACG*UUCAG

Length

11 nucleotides

Bulged bases

1Y69|1|0|C|2842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_116 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.3552

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

1Y69|1|0|U|2822
1Y69|1|0|G|2823
1Y69|1|0|C|2824
1Y69|1|0|A|2825
1Y69|1|0|C|2826
1Y69|1|0|G|2827
*
1Y69|1|0|U|2840
1Y69|1|0|U|2841
1Y69|1|0|C|2842
1Y69|1|0|A|2843
1Y69|1|0|G|2844

Current chains

Chain 0

23S ribosomal RNA

Nearby chains