IL_1Y69_118

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CAC*GCAG

Length

7 nucleotides

Bulged bases

1Y69|1|9|A|68

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_118 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.35

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

1Y69|1|9|C|19
1Y69|1|9|A|20
1Y69|1|9|C|21
*
1Y69|1|9|G|66
1Y69|1|9|C|67
1Y69|1|9|A|68
1Y69|1|9|G|69

Current chains

Chain 9

5S ribosomal RNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA