IL_1Y69_126

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

AGCACUC*GAAACU

Length

13 nucleotides

Bulged bases

1Y69|1|0|A|879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1Y69|1|0|A|876
1Y69|1|0|G|877
1Y69|1|0|C|878
1Y69|1|0|A|879
1Y69|1|0|C|880
1Y69|1|0|U|881
1Y69|1|0|C|882
*
1Y69|1|0|G|920
1Y69|1|0|A|921
1Y69|1|0|A|922
1Y69|1|0|A|923
1Y69|1|0|C|924
1Y69|1|0|U|925

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27