IL_1Y69_140

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GGAACCA*UGAAAC

Length

13 nucleotides

Bulged bases

1Y69|1|9|A|27

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y69_140 not in the Motif Atlas

Geometric match to IL_9E6Q_106

Geometric discrepancy: 0.3849

The information below is about IL_9E6Q_106

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41504.1

Basepair signature

cWW-tSH-L-R-L-tHH-cWW

Number of instances in this motif group

5

Unit IDs

1Y69|1|9|G|25
1Y69|1|9|G|26
1Y69|1|9|A|27
1Y69|1|9|A|28
1Y69|1|9|C|29
1Y69|1|9|C|30
1Y69|1|9|A|31
*
1Y69|1|9|U|57
1Y69|1|9|G|58
1Y69|1|9|A|59
1Y69|1|9|A|60
1Y69|1|9|A|61
1Y69|1|9|C|62

Current chains

Chain 9

5S ribosomal RNA

Nearby chains