IL_1Y6S_001

3D structure

PDB id

1Y6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

HIV-1 DIS(Mal) duplex Ba-soaked

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAGG*CAC

Length

7 nucleotides

Bulged bases

1Y6S|1|A|A|8

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y6S_001 not in the Motif Atlas

Geometric match to IL_1XJR_003

Geometric discrepancy: 0.1436

The information below is about IL_1XJR_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

1Y6S|1|A|G|7
1Y6S|1|A|A|8
1Y6S|1|A|G|9
1Y6S|1|A|G|10
*
1Y6S|1|B|C|15
1Y6S|1|B|A|16
1Y6S|1|B|C|17

Current chains

Chain A

5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'

Chain B

5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'

Nearby chains