IL_1Y90_004

3D structure

PDB id

1Y90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

HIV-1 Dis(Mal) Duplex Mn-Soaked

Experimental method

X-RAY DIFFRACTION

Resolution

3.08 Å

Loop

Sequence

AAG*C(5BU)U

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Y90_004 not in the Motif Atlas

Geometric match to IL_4KNQ_004

Geometric discrepancy: 0.1331

The information below is about IL_4KNQ_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

1Y90|1|A|A|21
1Y90|1|A|A|22
1Y90|1|A|G|23
*
1Y90|1|B|C|1
1Y90|1|B|5BU|2
1Y90|1|B|U|3

Current chains

Chain A

5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'

Chain B

5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'

Nearby chains