IL_1YHQ_081

3D structure

PDB id

1YHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Azithromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUC*GGCUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YHQ_081 not in the Motif Atlas

Geometric match to IL_4V9F_084

Geometric discrepancy: 0.0753

The information below is about IL_4V9F_084

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

1YHQ|1|0|G|2494
1YHQ|1|0|U|2495
1YHQ|1|0|C|2496
*
1YHQ|1|0|G|2524
1YHQ|1|0|G|2525
1YHQ|1|0|C|2526
1YHQ|1|0|U|2527
1YHQ|1|0|U|2528

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain H

50S RIBOSOMAL PROTEIN L10E