IL_1YI2_027

3D structure

PDB id

1YI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Erythromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

UGAAG*UGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YI2_027 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.0329

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

1YI2|1|0|U|794
1YI2|1|0|G|795
1YI2|1|0|A|796
1YI2|1|0|A|797
1YI2|1|0|G|798
*
1YI2|1|0|U|815
1YI2|1|0|G|816
1YI2|1|0|G|817
1YI2|1|0|A|818
1YI2|1|0|A|819

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain P

50S ribosomal protein L19E

Chain Z

50S ribosomal protein L37Ae