IL_1YIJ_015

3D structure

PDB id

1YIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Telithromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UACAAG*CGA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YIJ_015 not in the Motif Atlas

Geometric match to IL_4V9F_015

Geometric discrepancy: 0.0429

The information below is about IL_4V9F_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59302.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

1YIJ|1|0|U|548
1YIJ|1|0|A|549
1YIJ|1|0|C|550
1YIJ|1|0|A|551
1YIJ|1|0|A|552
1YIJ|1|0|G|553
*
1YIJ|1|0|C|606
1YIJ|1|0|G|607
1YIJ|1|0|A|608

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L32E