IL_1YIT_025

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AC*GAU

Length

5 nucleotides

Bulged bases

1YIT|1|0|A|857

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YIT_025 not in the Motif Atlas

Geometric match to IL_4V9F_025

Geometric discrepancy: 0.047

The information below is about IL_4V9F_025

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

1YIT|1|0|A|788
1YIT|1|0|C|789
*
1YIT|1|0|G|856
1YIT|1|0|A|857
1YIT|1|0|U|858

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2P

Chain Z

50S RIBOSOMAL PROTEIN L37AE