IL_1YIT_029

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

1YIT|1|0|U|835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YIT_029 not in the Motif Atlas

Geometric match to IL_4V9F_029

Geometric discrepancy: 0.0615

The information below is about IL_4V9F_029

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

1YIT|1|0|G|834
1YIT|1|0|U|835
1YIT|1|0|G|836
*
1YIT|1|0|C|847
1YIT|1|0|C|848

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 8

VIRGINIAMYCIN S1

Chain B

50S RIBOSOMAL PROTEIN L3P