IL_1YIT_074

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

1YIT|1|0|A|2474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YIT_074 not in the Motif Atlas

Geometric match to IL_5J7L_324

Geometric discrepancy: 0.0497

The information below is about IL_5J7L_324

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

1YIT|1|0|G|2111
1YIT|1|0|A|2112
*
1YIT|1|0|U|2473
1YIT|1|0|A|2474
1YIT|1|0|C|2475
1YIT|1|0|C|2476

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 8

VIRGINIAMYCIN S1

Chain A

50S RIBOSOMAL PROTEIN L2P