IL_1YIT_084

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUC*GUGAG

Length

8 nucleotides

Bulged bases

1YIT|1|0|G|2611, 1YIT|1|0|A|2612

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YIT_084 not in the Motif Atlas

Geometric match to IL_4V9F_087

Geometric discrepancy: 0.0476

The information below is about IL_4V9F_087

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

1YIT|1|0|U|2545
1YIT|1|0|U|2546
1YIT|1|0|C|2547
*
1YIT|1|0|G|2609
1YIT|1|0|U|2610
1YIT|1|0|G|2611
1YIT|1|0|A|2612
1YIT|1|0|G|2613

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 8

VIRGINIAMYCIN S1

Chain B

50S RIBOSOMAL PROTEIN L3P

Chain K

50S RIBOSOMAL PROTEIN L14P