IL_1YIT_094

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAC*GCAC

Length

7 nucleotides

Bulged bases

1YIT|1|0|A|2902

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YIT_094 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.0539

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

1YIT|1|0|G|2855
1YIT|1|0|A|2856
1YIT|1|0|C|2857
*
1YIT|1|0|G|2900
1YIT|1|0|C|2901
1YIT|1|0|A|2902
1YIT|1|0|C|2903

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3P

Chain X

50S RIBOSOMAL PROTEIN L31E