IL_1YIT_108

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAAUUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YIT_108 not in the Motif Atlas

Homologous match to IL_4V9F_111

Geometric discrepancy: 0.0356

The information below is about IL_4V9F_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

1YIT|1|0|G|1744
1YIT|1|0|G|1745
1YIT|1|0|A|1746
1YIT|1|0|A|1747
1YIT|1|0|U|1748
1YIT|1|0|U|1749
1YIT|1|0|C|1750
1YIT|1|0|G|1751
1YIT|1|0|G|1752
*
1YIT|1|0|C|2031
1YIT|1|0|U|2032
1YIT|1|0|G|2033
1YIT|1|0|U|2034
1YIT|1|0|C|2035

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3P

Chain K

50S RIBOSOMAL PROTEIN L14P