IL_1YJ9_020

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAAC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YJ9_020 not in the Motif Atlas

Homologous match to IL_4V9F_020

Geometric discrepancy: 0.0458

The information below is about IL_4V9F_020

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

1YJ9|1|0|C|663
1YJ9|1|0|U|664
1YJ9|1|0|A|665
1YJ9|1|0|A|666
1YJ9|1|0|C|667
*
1YJ9|1|0|G|679
1YJ9|1|0|G|680
1YJ9|1|0|G|681
1YJ9|1|0|A|682
1YJ9|1|0|G|683

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4E

Chain L

50S ribosomal protein L15P