IL_1YJ9_030

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGG*CCAUC

Length

8 nucleotides

Bulged bases

1YJ9|1|0|G|869, 1YJ9|1|0|C|881, 1YJ9|1|0|A|882

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1YJ9_030 not in the Motif Atlas

Homologous match to IL_4V9F_030

Geometric discrepancy: 0.0384

The information below is about IL_4V9F_030

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_57881.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

1YJ9|1|0|G|868
1YJ9|1|0|G|869
1YJ9|1|0|G|870
*
1YJ9|1|0|C|880
1YJ9|1|0|C|881
1YJ9|1|0|A|882
1YJ9|1|0|U|883
1YJ9|1|0|C|884

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain A

50S ribosomal protein L2P

Chain M

50S Ribosomal Protein L15E